• AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis 

    Badidi, Elarbi; De Sousa, Cristina; Lang, Franz Bernd; Burger, Gertraud (2003)
    BACKGROUND:Sequence data analyses such as gene identification, structure modeling or phylogenetic tree inference involve a variety of bioinformatics software tools. Due to the heterogeneity of bioinformatics tools in usage and data requirements, ...
  • AutoFACT: An Automatic Functional Annotation and Classification Tool 

    Koski, Liisa; Gray, Michael; Lang, Franz Bernd; Burger, Gertraud (2005)
    BACKGROUND:Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence against one or more databases, an arduous process for large datasets.RESULTS:We ...
  • A maximum likelihood framework for protein design 

    Kleinman, Claudia; Rodrigue, Nicolas; Bonnard, Cécile; Philippe, Hervé; Lartillot, Nicolas (2006)
    BACKGROUND:The aim of protein design is to predict amino-acid sequences compatible with a given target structure. Traditionally envisioned as a purely thermodynamic question, this problem can also be understood in a wider context, where additional ...